Interpro hits
WebSummary of hits can be displayed according to a cutt off date, and can be sorted according to a few choices (sort according to gene name, number of new hits, total number of … WebObjective: To describe the process of a transcriptome characterization using Blast2GO.; Input data: A mouse RNA-seq dataset composed of 140803 contigs.; Pipeline: Blastx and InterproScan were performed with the complete dataset to identify proteins. Sequences with no Blastx hits nor IPS results were selected and further analyzed. RFAM and Local …
Interpro hits
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WebJun 25, 2024 · This webinar is about InterProScan, the underlying software application that scans both protein and nucleic acid sequences against InterPro's predictive mode... WebSep 1, 2003 · The default value β=3 gives a gene with a single InterPro hit a probability of 1−e −3 ≈0.95 to belong to the category. This is reasonable because InterPro is designed …
http://maize.uga.edu/MSU_func_download.shtml WebMar 11, 2024 · The InterPro API documentation consists of General documentation available on GitHub and a Swagger API documentation allowing to apply a range of …
WebApr 4, 2024 · homologue of trithorax (ATX1); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc … WebIn this version of InterProScan, you can retrieve output in any of the following five formats: XML: The InterProScan XML format ( XSD available here ). InterProScan 5 can output …
WebNov 13, 2024 · Analysis workflow. Objective: To describe the process of a transcriptome characterization using Blast2GO. Input data: A mouse RNA-seq dataset composed of …
WebCalcineurin-like phosphoesterase InterPro annotation. BLAST Add. ... SSF69572 Activating enzymes of the ubiquitin-like proteins 1 hit; SSF102712 JAB1/MPN domain 1 hit; … entertainment setup for pool areas orlandoWebThe AGPv4 genome, AGPv4 annotation, and the University of Georgia (UGA) functional annotation is available to download below. The genome annotation and RNA-seq … entertainment shares in indiaWebInterPro is an integrative database which was established 10 years prior when the PROSITE, PRINTS, Pfam and ProDom databases framed a consortium to amalgamate … entertainment resorts in californiaWebDownload page¶. This is available under the Download section in the navigation menu.This page is divided into multiple tabs. The InterPro tab provides various files containing pre-calculated InterPro data for the current release that can be downloaded. Data from previous releases are available in the InterPro ftp.. The InterProScan tab provides a … dr halpern plastic surgeon tampaWebApr 4, 2024 · Preferred Names homologue of trithorax NP_850170.1. homologue of trithorax (ATX1); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, C-terminal (InterPro:IPR003889), Post-SET domain … entertainment set top boxWebInterPro is a database of protein families, protein domains and functional sites in which identifiable features found in known proteins can be applied to new protein sequences in … dr halper office rvcWebthe individual InterPro entries hit. InterPro and InterProScan 65 8. Click “Detailed view” to see a graphical view displaying hits to all signatures from each InterPro entry hit. 9. dr halpern ophthalmology